Leveraging Genomics To Achieve Dairy Net-Zero: Genotype File Layout
Description
Data schema for the pedigree file layout for the Net-Zero Dairy Genome Project.
Schéma
| Attribut | Unité | Libellé | Information | Type de données | Format |
|---|---|---|---|---|---|
| ANIMAL_ID | ANIMAL_ID | INTERBULL REGISTRATION CODE WHICH HAS EXACTLY 19 CHARACTERS. MADE UP OF FOUR COMPONENTS: BREED (3), COUNTRY (3), SEX(1), REGISTRATION NUMBER(12) | Text | ||
| SAMPLE_ID | SAMPLE_ID | UNIQUELY IDENTIFIES GENOTYPE (ie. SENTRIX CODE); DO NOT USE THE ANIMAL_ID (REGISTRATION NUM) TO ALLOW FOR MULTIPLE GENOTYPES PER ANIMAL IF REQUIRED | Text | ||
| TRANSACTION_TYPE | TRANSACTION_TYPE | Text | |||
| SNP_CHIP_PANEL_TYPE | SNP_CHIP_PANEL_TYPE | Text | |||
| IMPUTATION_USED_TO_GENERATE_DATA | IMPUTATION_USED_TO_GENERATE_DATA | YES or NO | Text | ||
| PANEL_TYPE_BEFORE_IMPUTATION | PANEL_TYPE_BEFORE_IMPUTATION | Text | |||
| DATE_OF_GENOTYPE_TEST | DATE_OF_GENOTYPE_TEST | DateTime | |||
| FILE_TYPE | FILE_TYPE | Text | |||
| GENOTYPE | GENOTYPE | USING THE CDCB FORMAT ; THE GENOTYPE IS A VARIABLE LENGTH STRING OF 0,1,2,5 INDICATING SNP GENOTYPES OF BB, AB, AA, \\-\\- (1 BYTE PER SNP, NO COMMAS BETWEEN SNPS). FOR EXAMPLE \'01252010250211110025.......\'. | Text | ||
| SOURCE_OF_DATA | SOURCE_OF_DATA | See contacts list under \'Source of Data\' column | Text | ||
| PROJECT | PROJECT | Text |