BENEFIT: CCASM Strain Collection
Description
Metadata associated with the bacterial strains deposited in the Canadian Collection of Agricultural Soil Microbes (CCASM).
Schema
| Attribute | Unit | Label | Information | Datatype | Format |
|---|---|---|---|---|---|
| CCASM_ID | CCASM identifier | The unique CCASM identifier of the strain | Text | ||
| Queens_box_ID | Queen's freezer box ID | The barcode on the freezer box of the replicate stored at Queen\'s University | Text | ||
| Queens_box_name | Queen's freezer box name | The common name of the freezer box of the replicate stored at Queen\'s University | Text | ||
| Queens_well | Queen's freezer box well position | The position within the freezer box of the replicate stored at Queen\'s University | Text | ||
| Queens_barcode | Queen's freezer vial barcode | The barcode on the freezer vial of the replicate stored at Queen\'s University | Text | ||
| Manitoba_box_ID | Manitoba freezer box ID | The barcode on the freezer box of the replicate stored at the University of Manitoba | Text | ||
| Manitoba_box_name | Manitoba freezer box name | The common name of the freezer box of the replicate stored at the University of Manitoba | Text | ||
| Manitoba_well | Manitoba freezer box well position | The position within the freezer box of the replicate stored at the University of Manitoba | Text | ||
| Manitoba_barcode | Manitoba freezer vial barcode | The barcode on the freezer vial of the replicate stored at the University of Manitoba | Text | ||
| strain_name | Strain name(s) | Other strain name(s) of the isolate | Text | ||
| binomial_classification | Binomial classification | The binomial classification (genus and species, if classified) of the isolate | Text | ||
| taxonomic_lineage | Full taxonomic lineage | The full taxonomic lineage of the isolate | Text | ||
| risk_group | Risk group | The risk group (1, 2, 3, 4) of the isolate, if known | Numeric | ||
| is_plant_pathogen | Is the strain a plant pathogen | An indication of whether the strain is a known plant pathogen | Text | ||
| colony_morphology | Colony morphology | Description of the colony morphology of the isolate | Text | ||
| host_plant_species | Associated plant species | The plant species from which the microbe was isolated, or that was planted in the soil from which the microbe was isolated | Text | ||
| isolation_source | Isolation source | The source (soil or plant tissue type) that the microbe was isolated from | Text | ||
| isolation_year | Isolation year | The year that the microbe was isolated | DateTime | ||
| isolation_protocol | Isolation protocol | The method used for isolating the microbe | Text | ||
| isolation_growth_medium | Isolation growth medium | The name of the growth medium that was used to isolate the microbe | Text | ||
| isolation_growth_temperature | Isolation growth temperature | The incubation temperature used when isolating the microbe | Numeric | ||
| isolation_growth_medium_composition | Isolation growth medium composition | The full composition of the growth medium used to isolate the microbe | Text | ||
| isolation_soil_ph | Isolation soil pH | The pH of the soil from which the microbe was isolated, if known and if relevant | Numeric | ||
| isolation_soil_organic_matter | Isolation soil organic matter (%) | The organic matter content of the soil from which the microbe was isolated, if known and if relevant | Numeric | ||
| isolation_soil_texture | Isolation soil texture | The texture of the soil from which the microbe was isolated, if known and if relevant | Text | ||
| isolation_soil_province | Isolation soil province | The province from which the soil (or plant material) was isolated | Text | ||
| longitude | Longitute | The longitude at which the soil or plant material was sampled | Numeric | ||
| latitude | Latitude | The latitude at which the soil or plant material was sampled | Numeric | ||
| genome_ncbi_association | Genome NCBI accession | NCBI accession code(s) for the genome assembly of the microbe, if available | Text | ||
| genome_size | Genome size | The genome size of the microbe, if known | Numeric | ||
| notes | Notes | Additional notes about the microbe | Text | ||
| citation | Citation | Citation of the study reporting the microbe, if available | Text |